PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G082800.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 275aa    MW: 31400.1 Da    PI: 9.9301
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G082800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.3e-19137224196
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k++++s+v++  +l lp++f+++h   ++++++++lede+g +++  +   +++ +  l++GW++F   ++L++gD++vF+l++ ++f 
  Brast08G082800.3.p 137 FVKTMVRSHVSSCFWLGLPNRFCKDHL--PPREFKMVLEDEEGVEFDTVY--IGNRTG--LSGGWRGFSMHHNLEDGDSLVFELVEPDRF- 220
                         89*********************9995..34779****************..555444..***********************9987777. PP

                         .EEEE CS
                  B3  92 lvvkv 96 
                          ++ +
  Brast08G082800.3.p 221 -KIYI 224
                         .5555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-21129226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-24130226IPR015300DNA-binding pseudobarrel domain
CDDcd100172.50E-28135226No hitNo description
PfamPF023625.3E-18137225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.506137228IPR003340B3 DNA binding domain
SMARTSM010194.6E-23137228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MATEASSAAA GTAYEEERRK RILENLKHLE DLGIAKMSKS LIQAARLQDK SKRASPKSRK  60
KFEATTEVRR SSRTRTSVSY KDDFPEVDHF VRRRRASTSA ENGRGYTGRI SSYQQQQRAF  120
KRAEKLQDSL DPDNPSFVKT MVRSHVSSCF WLGLPNRFCK DHLPPREFKM VLEDEEGVEF  180
DTVYIGNRTG LSGGWRGFSM HHNLEDGDSL VFELVEPDRF KIYIIKAIDD DANEAKSSRD  240
STEEEHDRKD SPVSEAPSSP EPLKGAKRRK LRRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262268LKGAKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0949790.0FP094979.1 Phyllostachys edulis cDNA clone: bphyst037c23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568233.10.0PREDICTED: B3 domain-containing protein Os05g0481400
SwissprotQ5KQI41e-136Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLI1HIC90.0I1HIC9_BRADI; Uncharacterized protein
STRINGBRADI2G22130.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.13e-39B3 family protein